{ "_id": "6a1e85361d7bb097a0a66f17", "Package": "respirometry", "Type": "Package", "Title": "Tools for Conducting and Analyzing Respirometry Experiments", "Version": "2.0.2", "Date": "2025-04-17", "Authors@R": "person(given = c(\"Matthew\", \"A.\"),\nfamily = \"Birk\",\nrole = c(\"aut\", \"cre\"),\nemail = \"matthewabirk@gmail.com\",\ncomment = c(ORCID = \"0000-0003-0407-4077\"))", "Description": "Provides tools to enable the researcher to more precisely\nconduct respirometry experiments. Strong emphasis is on aquatic\nrespirometry. Tools focus on helping the researcher setup and\nconduct experiments. Functions for analysis of resulting\nrespirometry data are also provided. This package provides\ntools for intermittent, flow-through, and closed respirometry\ntechniques.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 07:21:47 UTC", "User": "root" }, "Author": "Matthew A. 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a new temperature", "topics": [ "adj_by_temp" ] }, { "page": "calc_alpha", "title": "Calculate the oxygen supply capacity (alpha)", "topics": [ "calc_alpha" ] }, { "page": "calc_b", "title": "Calculate the metabolic scaling coefficient, b", "topics": [ "calc_b" ] }, { "page": "calc_E", "title": "Calculate E temperature coefficient", "topics": [ "calc_E" ] }, { "page": "calc_MO2", "title": "Calculate metabolic rate", "topics": [ "calc_MO2", "calc_mo2" ] }, { "page": "calc_pcrit", "title": "Calculate Pcrit", "topics": [ "calc_pcrit" ] }, { "page": "closed", "title": "Closed respirometry", "topics": [ "closed" ] }, { "page": "co2_add", "title": "Calculate CO2 to add to water", "topics": [ "co2_add" ] }, { "page": "co2_flush", "title": "Calculate CO2 to add to flush reservoir", "topics": [ "co2_flush" ] }, { "page": "co2_rate", "title": "Calculate CO2 to add to a respirometer intake flow", "topics": [ "co2_rate" ] }, { "page": "conv_nh4", "title": "Convert between units of ammonia (NH3) / ammonium (NH4+)", "topics": [ "conv_nh4" ] }, { "page": "conv_o2", "title": "Convert between units of oxygen partial pressure and concentration", "topics": [ "conv_o2" ] }, { "page": "conv_resp_unit", "title": "Convert units related to respirometry", "topics": [ "conv_resp_unit" ] }, { "page": "correct_bubble", "title": "Adjust respirometer volume for bubbles", "topics": [ "correct_bubble" ] }, { "page": "flush_carb", "title": "Estimate carbonate chemistry after a flush", "topics": [ "flush_carb" ] }, { "page": "flush_o2", "title": "Estimate dissolved O2 after a flush", "topics": [ "flush_o2" ] }, { "page": "flush_water", "title": "Find percent of water exchanged after a flush", "topics": [ "flush_water" ] }, { "page": "goal_flush_pH", "title": "Calculate goal pH of a flush reservoir to achieve the post-flush goal pCO2", "topics": [ "goal_flush_pH" ] }, { "page": "guess_TA", "title": "Estimate total alkalinity from salinity", "topics": [ "guess_TA" ] }, { "page": "guess_when", "title": 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